Last updated on 2024-05-31 23:55:08 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
RItools | 7 | 3 | 2 |
Current CRAN status: ERROR: 7, NOTE: 3, OK: 2
Version: 0.3-3
Check: Rd files
Result: NOTE
checkRd: (-1) CovsAlignedToADesign-class.Rd:22: Lost braces; missing escapes or markup?
22 | specified stratum weight to the product of h_b (the harmonic mean of n_{tb} and
| ^
checkRd: (-1) CovsAlignedToADesign-class.Rd:23: Lost braces; missing escapes or markup?
23 | n_{cb}, the counts of treatment and control clusters in stratum b) with bar-w_b,
| ^
checkRd: (-1) DesignWeights.Rd:39: Lost braces; missing escapes or markup?
39 | mean of n_{tb} and n_{cb}, the number of treatment and control
| ^
checkRd: (-1) DesignWeights.Rd:39: Lost braces; missing escapes or markup?
39 | mean of n_{tb} and n_{cb}, the number of treatment and control
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.3-3
Check: examples
Result: ERROR
Running examples in ‘RItools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: balanceTest
> ### Title: Standardized Differences for Stratified Comparisons
> ### Aliases: balanceTest
> ### Keywords: design nonparametric
>
> ### ** Examples
>
> data(nuclearplants)
> ## No strata
> balanceTest(pr ~ date + t1 + t2 + cap + ne + ct + bw + cum.n,
+ data=nuclearplants)
strata(): --
stat Treatment Control adj.diff std.diff z
vars
date 68.5 68.6 -0.118 -0.11 -0.31
t1 14.0 13.6 0.364 0.10 0.28
t2 69.1 59.3 9.78 0.99 2.47
cap 870 805 64.6 0.35 0.89
ne 0.200 0.273 -0.0727 -0.17 -0.43
ct 0.300 0.455 -0.155 -0.31 -0.81
bw 0.200 0.182 0.0182 0.04 0.12
cum.n 8.10 8.73 -0.627 -0.10 -0.26
---Overall Test---
chisquare df p.value
-- 11.5 8 0.177
---
Signif. codes: 0 ‘***’ 0.001 ‘** ’ 0.01 ‘* ’ 0.05 ‘. ’ 0.1 ‘ ’ 1
>
> ## Stratified
> ## Note use of the `. - cost` to use all columns except `cost`
> balanceTest(pr ~ . - cost + strata(pt),
+ data=nuclearplants)
strata(): pt --
stat Treatment Control adj.diff std.diff z Treatment Control adj.diff std.diff z
vars
date 68.5 68.4 0.109 0.10 0.29 68.5 68.6 -0.118 -0.11 -0.31
t1 14.0 13.2 0.800 0.21 0.79 14.0 13.6 0.364 0.10 0.28
t2 69.1 59.1 10.03 1.01 2.31 69.1 59.3 9.78 0.99 2.47
cap 870 807 62.3 0.34 0.92 870 805 64.6 0.35 0.89
ne 0.200 0.221 -0.0211 -0.05 -0.14 0.200 0.273 -0.0727 -0.17 -0.43
ct 0.300 0.432 -0.132 -0.26 -0.58 0.300 0.455 -0.155 -0.31 -0.81
bw 0.200 0.211 -0.0105 -0.03 -0.31 0.200 0.182 0.0182 0.04 0.12
cum.n 8.10 8.72 -0.616 -0.10 -0.34 8.10 8.73 -0.627 -0.10 -0.26
pt 0.300 0.300 -1.11e-16 0.00 NA 0.300 0.136 1.64e-01 0.39 1.08
---Overall Test---
chisquare df p.value
pt 10.8 8 0.215
-- 12.4 9 0.192
---
Signif. codes: 0 ‘***’ 0.001 ‘** ’ 0.01 ‘* ’ 0.05 ‘. ’ 0.1 ‘ ’ 1
>
> ##Missing data handling.
> testdata <- nuclearplants
> testdata$date[testdata$date < 68] <- NA
> balanceTest(pr ~ . - cost + strata(pt),
+ data = testdata)
Error in .local(x, ...) : insufficient space
Calls: balanceTest -> sapply -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.3-3
Check: tests
Result: ERROR
Running ‘testthat.R’ [42s/70s]
Running ‘xBalanceTests2.R’ [3s/5s]
Comparing ‘xBalanceTests2.Rout’ to ‘xBalanceTests2.Rout.save’ ... OK
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RItools)
Loading required package: ggplot2
>
> test_check("RItools")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.Design.R:650:5'): alignDesigns, designToDescriptives output alignment ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2) at test.Design.R:650:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:674:5'): alignDesigns centers covars by stratum ───────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple0) at test.Design.R:674:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:737:5'): scale() method wrapping to alignDesignsByStrata() ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2b, post.align.transform = NULL) at test.Design.R:737:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.balanceTest.R:219:3'): Use of subset argument ──────────────────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.balanceTest.R:219:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools::balanceTest(...)
7. └─base::sapply(...)
8. └─base::lapply(X = X, FUN = FUN, ...)
9. └─RItools (local) FUN(X[[i]], ...)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─RItools:::slm.wfit.csr(...)
13. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
14. ├─SparseM::chol(t(x) %*% x, ...)
15. └─SparseM::chol(t(x) %*% x, ...)
16. └─SparseM (local) .local(x, ...)
── Error ('test.utils.R:48:15'): sparse design strat mean calculator returns 0 for strata w/o non-null wts ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.utils.R:48:15
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools:::slm.wfit.csr(S_, matrix(1:4), weights = wts)
7. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
8. ├─SparseM::chol(t(x) %*% x, ...)
9. └─SparseM::chol(t(x) %*% x, ...)
10. └─SparseM (local) .local(x, ...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3-3
Check: examples
Result: ERROR
Running examples in ‘RItools-Ex.R’ failed
The error most likely occurred in:
> ### Name: balanceTest
> ### Title: Standardized Differences for Stratified Comparisons
> ### Aliases: balanceTest
> ### Keywords: design nonparametric
>
> ### ** Examples
>
> data(nuclearplants)
> ## No strata
> balanceTest(pr ~ date + t1 + t2 + cap + ne + ct + bw + cum.n,
+ data=nuclearplants)
strata(): --
stat Treatment Control adj.diff std.diff z
vars
date 68.5 68.6 -0.118 -0.11 -0.31
t1 14.0 13.6 0.364 0.10 0.28
t2 69.1 59.3 9.78 0.99 2.47
cap 870 805 64.6 0.35 0.89
ne 0.200 0.273 -0.0727 -0.17 -0.43
ct 0.300 0.455 -0.155 -0.31 -0.81
bw 0.200 0.182 0.0182 0.04 0.12
cum.n 8.10 8.73 -0.627 -0.10 -0.26
---Overall Test---
chisquare df p.value
-- 11.5 8 0.177
---
Signif. codes: 0 ‘***’ 0.001 ‘** ’ 0.01 ‘* ’ 0.05 ‘. ’ 0.1 ‘ ’ 1
>
> ## Stratified
> ## Note use of the `. - cost` to use all columns except `cost`
> balanceTest(pr ~ . - cost + strata(pt),
+ data=nuclearplants)
strata(): pt --
stat Treatment Control adj.diff std.diff z Treatment Control adj.diff std.diff z
vars
date 68.5 68.4 0.109 0.10 0.29 68.5 68.6 -0.118 -0.11 -0.31
t1 14.0 13.2 0.800 0.21 0.79 14.0 13.6 0.364 0.10 0.28
t2 69.1 59.1 10.03 1.01 2.31 69.1 59.3 9.78 0.99 2.47
cap 870 807 62.3 0.34 0.92 870 805 64.6 0.35 0.89
ne 0.200 0.221 -0.0211 -0.05 -0.14 0.200 0.273 -0.0727 -0.17 -0.43
ct 0.300 0.432 -0.132 -0.26 -0.58 0.300 0.455 -0.155 -0.31 -0.81
bw 0.200 0.211 -0.0105 -0.03 -0.31 0.200 0.182 0.0182 0.04 0.12
cum.n 8.10 8.72 -0.616 -0.10 -0.34 8.10 8.73 -0.627 -0.10 -0.26
pt 0.300 0.300 -1.11e-16 0.00 NA 0.300 0.136 1.64e-01 0.39 1.08
---Overall Test---
chisquare df p.value
pt 10.8 8 0.215
-- 12.4 9 0.192
---
Signif. codes: 0 ‘***’ 0.001 ‘** ’ 0.01 ‘* ’ 0.05 ‘. ’ 0.1 ‘ ’ 1
>
> ##Missing data handling.
> testdata <- nuclearplants
> testdata$date[testdata$date < 68] <- NA
> balanceTest(pr ~ . - cost + strata(pt),
+ data = testdata)
Error in .local(x, ...) : insufficient space
Calls: balanceTest -> sapply -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.3-3
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/299s]
Running ‘xBalanceTests2.R’ [5s/23s]
Comparing ‘xBalanceTests2.Rout’ to ‘xBalanceTests2.Rout.save’ ... OK
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RItools)
Loading required package: ggplot2
>
> test_check("RItools")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.Design.R:650:5'): alignDesigns, designToDescriptives output alignment ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2) at test.Design.R:650:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:674:5'): alignDesigns centers covars by stratum ───────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple0) at test.Design.R:674:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:737:5'): scale() method wrapping to alignDesignsByStrata() ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2b, post.align.transform = NULL) at test.Design.R:737:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.balanceTest.R:219:3'): Use of subset argument ──────────────────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.balanceTest.R:219:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools::balanceTest(...)
7. └─base::sapply(...)
8. └─base::lapply(X = X, FUN = FUN, ...)
9. └─RItools (local) FUN(X[[i]], ...)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─RItools:::slm.wfit.csr(...)
13. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
14. ├─SparseM::chol(t(x) %*% x, ...)
15. └─SparseM::chol(t(x) %*% x, ...)
16. └─SparseM (local) .local(x, ...)
── Error ('test.utils.R:48:15'): sparse design strat mean calculator returns 0 for strata w/o non-null wts ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.utils.R:48:15
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools:::slm.wfit.csr(S_, matrix(1:4), weights = wts)
7. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
8. ├─SparseM::chol(t(x) %*% x, ...)
9. └─SparseM::chol(t(x) %*% x, ...)
10. └─SparseM (local) .local(x, ...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3-3
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/294s]
Running ‘xBalanceTests2.R’ [5s/24s]
Comparing ‘xBalanceTests2.Rout’ to ‘xBalanceTests2.Rout.save’ ... OK
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RItools)
Loading required package: ggplot2
>
> test_check("RItools")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1407 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.Design.R:650:5'): alignDesigns, designToDescriptives output alignment ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2) at test.Design.R:650:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:674:5'): alignDesigns centers covars by stratum ───────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple0) at test.Design.R:674:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:737:5'): scale() method wrapping to alignDesignsByStrata() ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2b, post.align.transform = NULL) at test.Design.R:737:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.balanceTest.R:219:3'): Use of subset argument ──────────────────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.balanceTest.R:219:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools::balanceTest(...)
7. └─base::sapply(...)
8. └─base::lapply(X = X, FUN = FUN, ...)
9. └─RItools (local) FUN(X[[i]], ...)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─RItools:::slm.wfit.csr(...)
13. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
14. ├─SparseM::chol(t(x) %*% x, ...)
15. └─SparseM::chol(t(x) %*% x, ...)
16. └─SparseM (local) .local(x, ...)
── Error ('test.utils.R:48:15'): sparse design strat mean calculator returns 0 for strata w/o non-null wts ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.utils.R:48:15
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools:::slm.wfit.csr(S_, matrix(1:4), weights = wts)
7. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
8. ├─SparseM::chol(t(x) %*% x, ...)
9. └─SparseM::chol(t(x) %*% x, ...)
10. └─SparseM (local) .local(x, ...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1407 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3-3
Check: tests
Result: ERROR
Running 'testthat.R' [35s]
Running 'xBalanceTests2.R' [2s]
Comparing 'xBalanceTests2.Rout' to 'xBalanceTests2.Rout.save' ... OK
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(RItools)
Loading required package: ggplot2
>
> test_check("RItools")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.Design.R:650:5'): alignDesigns, designToDescriptives output alignment ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2) at test.Design.R:650:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:674:5'): alignDesigns centers covars by stratum ───────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple0) at test.Design.R:674:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:737:5'): scale() method wrapping to alignDesignsByStrata() ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2b, post.align.transform = NULL) at test.Design.R:737:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.balanceTest.R:219:3'): Use of subset argument ──────────────────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.balanceTest.R:219:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools::balanceTest(...)
7. └─base::sapply(...)
8. └─base::lapply(X = X, FUN = FUN, ...)
9. └─RItools (local) FUN(X[[i]], ...)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─RItools:::slm.wfit.csr(...)
13. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
14. ├─SparseM::chol(t(x) %*% x, ...)
15. └─SparseM::chol(t(x) %*% x, ...)
16. └─SparseM (local) .local(x, ...)
── Error ('test.utils.R:48:15'): sparse design strat mean calculator returns 0 for strata w/o non-null wts ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.utils.R:48:15
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools:::slm.wfit.csr(S_, matrix(1:4), weights = wts)
7. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
8. ├─SparseM::chol(t(x) %*% x, ...)
9. └─SparseM::chol(t(x) %*% x, ...)
10. └─SparseM (local) .local(x, ...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.3-3
Check: tests
Result: ERROR
Running ‘testthat.R’ [60s/79s]
Running ‘xBalanceTests2.R’ [4s/4s]
Comparing ‘xBalanceTests2.Rout’ to ‘xBalanceTests2.Rout.save’ ... OK
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(RItools)
Loading required package: ggplot2
>
> test_check("RItools")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.Design.R:650:5'): alignDesigns, designToDescriptives output alignment ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2) at test.Design.R:650:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:674:5'): alignDesigns centers covars by stratum ───────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple0) at test.Design.R:674:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:737:5'): scale() method wrapping to alignDesignsByStrata() ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2b, post.align.transform = NULL) at test.Design.R:737:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.balanceTest.R:219:3'): Use of subset argument ──────────────────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.balanceTest.R:219:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools::balanceTest(...)
7. └─base::sapply(...)
8. └─base::lapply(X = X, FUN = FUN, ...)
9. └─RItools (local) FUN(X[[i]], ...)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─RItools:::slm.wfit.csr(...)
13. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
14. ├─SparseM::chol(t(x) %*% x, ...)
15. └─SparseM::chol(t(x) %*% x, ...)
16. └─SparseM (local) .local(x, ...)
── Error ('test.utils.R:48:15'): sparse design strat mean calculator returns 0 for strata w/o non-null wts ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.utils.R:48:15
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools:::slm.wfit.csr(S_, matrix(1:4), weights = wts)
7. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
8. ├─SparseM::chol(t(x) %*% x, ...)
9. └─SparseM::chol(t(x) %*% x, ...)
10. └─SparseM (local) .local(x, ...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3-3
Check: tests
Result: ERROR
Running 'testthat.R' [36s]
Running 'xBalanceTests2.R' [3s]
Comparing 'xBalanceTests2.Rout' to 'xBalanceTests2.Rout.save' ... OK
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(RItools)
Loading required package: ggplot2
>
> test_check("RItools")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.Design.R:650:5'): alignDesigns, designToDescriptives output alignment ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2) at test.Design.R:650:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:674:5'): alignDesigns centers covars by stratum ───────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple0) at test.Design.R:674:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:737:5'): scale() method wrapping to alignDesignsByStrata() ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2b, post.align.transform = NULL) at test.Design.R:737:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.balanceTest.R:219:3'): Use of subset argument ──────────────────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.balanceTest.R:219:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools::balanceTest(...)
7. └─base::sapply(...)
8. └─base::lapply(X = X, FUN = FUN, ...)
9. └─RItools (local) FUN(X[[i]], ...)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─RItools:::slm.wfit.csr(...)
13. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
14. ├─SparseM::chol(t(x) %*% x, ...)
15. └─SparseM::chol(t(x) %*% x, ...)
16. └─SparseM (local) .local(x, ...)
── Error ('test.utils.R:48:15'): sparse design strat mean calculator returns 0 for strata w/o non-null wts ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.utils.R:48:15
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools:::slm.wfit.csr(S_, matrix(1:4), weights = wts)
7. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
8. ├─SparseM::chol(t(x) %*% x, ...)
9. └─SparseM::chol(t(x) %*% x, ...)
10. └─SparseM (local) .local(x, ...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3-3
Check: tests
Result: ERROR
Running 'testthat.R' [51s]
Running 'xBalanceTests2.R' [4s]
Comparing 'xBalanceTests2.Rout' to 'xBalanceTests2.Rout.save' ... OK
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(RItools)
Loading required package: ggplot2
>
> test_check("RItools")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test.Design.R:650:5'): alignDesigns, designToDescriptives output alignment ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2) at test.Design.R:650:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:674:5'): alignDesigns centers covars by stratum ───────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple0) at test.Design.R:674:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.Design.R:737:5'): scale() method wrapping to alignDesignsByStrata() ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. └─RItools:::alignDesignsByStrata("strat", simple2b, post.align.transform = NULL) at test.Design.R:737:5
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─RItools:::slm.wfit.csr(...)
5. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
6. ├─SparseM::chol(t(x) %*% x, ...)
7. └─SparseM::chol(t(x) %*% x, ...)
8. └─SparseM (local) .local(x, ...)
── Error ('test.balanceTest.R:219:3'): Use of subset argument ──────────────────
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.balanceTest.R:219:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools::balanceTest(...)
7. └─base::sapply(...)
8. └─base::lapply(X = X, FUN = FUN, ...)
9. └─RItools (local) FUN(X[[i]], ...)
10. ├─base::suppressWarnings(...)
11. │ └─base::withCallingHandlers(...)
12. └─RItools:::slm.wfit.csr(...)
13. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
14. ├─SparseM::chol(t(x) %*% x, ...)
15. └─SparseM::chol(t(x) %*% x, ...)
16. └─SparseM (local) .local(x, ...)
── Error ('test.utils.R:48:15'): sparse design strat mean calculator returns 0 for strata w/o non-null wts ──
Error in `.local(x, ...)`: insufficient space
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test.utils.R:48:15
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─RItools:::slm.wfit.csr(S_, matrix(1:4), weights = wts)
7. └─RItools:::slm.fit.csr.fixed(wx, wy, ...)
8. ├─SparseM::chol(t(x) %*% x, ...)
9. └─SparseM::chol(t(x) %*% x, ...)
10. └─SparseM (local) .local(x, ...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1406 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64