Last updated on 2024-10-15 11:49:24 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 48.10 | 256.52 | 304.62 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 30.44 | 160.17 | 190.61 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 551.56 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 445.25 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.3 | 54.00 | 266.00 | 320.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 43.77 | 243.38 | 287.15 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 40.76 | 239.70 | 280.46 | OK | |
| r-release-macos-arm64 | 2.0.3 | 114.00 | OK | |||
| r-release-macos-x86_64 | 2.0.3 | 196.00 | OK | |||
| r-release-windows-x86_64 | 2.0.3 | 55.00 | 272.00 | 327.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 125.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.3 | 286.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.3 | 65.00 | 338.00 | 403.00 | OK |
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘lavaSearch2-Ex.R’ failed
The error most likely occurred in:
> ### Name: coef2
> ### Title: Model Coefficients With Small Sample Correction
> ### Aliases: coef2 coef2.lvmfit
> ### Keywords: smallSampleCorrection
>
> ### ** Examples
>
> #### simulate data ####
> set.seed(10)
> dW <- sampleRepeated(10, format = "wide")
Error in cbind(idxM, pidxM) : cannot get data pointer of 'NULL' objects
Calls: sampleRepeated ... exogenous<- -> exogenous<-.lvm -> reindex -> mat.lvm -> cbind
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘test-all.R’ [122s/249s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> #library(lavaSearch2)
> suppressPackageStartupMessages(library("testthat"))
> suppressPackageStartupMessages(library("nlme"))
> suppressPackageStartupMessages(library("multcomp"))
> suppressPackageStartupMessages(library("Matrix"))
> test_check("lavaSearch2")
Loading required package: lavaSearch2
Loading required package: ggplot2
Loading required package: lava
Attaching package: 'lava'
The following object is masked from 'package:ggplot2':
vars
The following object is masked from 'package:testthat':
compare
lavaSearch2 version 2.0.3
- simulation
- multiple linear regression
- mixed model
- factor model
- two factor model
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 228 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-coefType.R:140:1'): (code run outside of `test_that()`) ────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(Y1 ~ 1) at test-coefType.R:140:1
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-previousBug.R:51:1'): (code run outside of `test_that()`) ──────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(G1 ~ 1, G2 ~ 1) at test-previousBug.R:51:1
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test1-sCorrect-missingValues.R:115:5'): full information (issue lava) ──
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::estimate(m, data = dNA.wide, missing = TRUE) at test1-sCorrect-missingValues.R:115:5
2. └─lava:::estimate.lvm(m, data = dNA.wide, missing = TRUE)
3. └─lava:::estimate.MAR(...)
4. ├─base::subset(Model(x), exogenous(x))
5. └─lava:::subset.lvm(Model(x), exogenous(x))
6. └─lava::lvm(vars)
7. ├─lava::addvar(res, myvar, messages = messages)
8. └─lava:::addvar.lvm(res, myvar, messages = messages)
9. └─lava::reindex(x)
10. └─lava:::mat.lvm(x, res)
11. └─base::cbind(idxM, pidxM)
── Error ('test1-sCorrect-missingValues.R:132:1'): (code run outside of `test_that()`) ──
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::estimate(m, dNA.wide, missing = TRUE) at test1-sCorrect-missingValues.R:132:1
2. └─lava:::estimate.lvm(m, dNA.wide, missing = TRUE)
3. └─lava:::estimate.MAR(...)
4. ├─base::subset(Model(x), exogenous(x))
5. └─lava:::subset.lvm(Model(x), exogenous(x))
6. └─lava::lvm(vars)
7. ├─lava::addvar(res, myvar, messages = messages)
8. └─lava:::addvar.lvm(res, myvar, messages = messages)
9. └─lava::reindex(x)
10. └─lava:::mat.lvm(x, res)
11. └─base::cbind(idxM, pidxM)
── Error ('test1a-sCorrect-validObjects.R:46:1'): (code run outside of `test_that()`) ──
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::estimate(lvm(G ~ X1), data = d) at test1a-sCorrect-validObjects.R:46:1
2. └─lava:::estimate.lvm(lvm(G ~ X1), data = d)
3. ├─base::do.call(...)
4. └─lava:::ordinal_estimate_hook(...)
5. ├─lava::`ordinal<-`(`*tmp*`, K = nlevels(y), value = i)
6. └─lava:::`ordinal<-.lvm`(`*tmp*`, K = nlevels(y), value = i)
7. ├─lava::ordinal(x, value, ...)
8. └─lava:::ordinal.lvm(x, value, ...)
9. ├─lava::`intfix<-`(`*tmp*`, var[i], NULL, value = 0)
10. └─lava:::`intfix<-.lvm`(`*tmp*`, var[i], NULL, value = 0)
11. ├─lava::`intercept<-`(`*tmp*`, ..., value = value)
12. └─lava:::`intercept<-.lvm`(`*tmp*`, ..., value = value)
13. └─lava::reindex(object)
14. └─lava:::mat.lvm(x, res)
15. └─base::cbind(idxM, pidxM)
── Error ('test1c-sCorrect-ssc.R:223:1'): (code run outside of `test_that()`) ──
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(...) at test1c-sCorrect-ssc.R:223:1
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(...)
6. └─lava:::`intercept<-.lvm`(...)
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test1d-sCorrect-residuals2.R:117:1'): (code run outside of `test_that()`) ──
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(...) at test1d-sCorrect-residuals2.R:117:1
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(...)
6. └─lava:::`intercept<-.lvm`(...)
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test1d-sCorrect-summary2.R:103:1'): (code run outside of `test_that()`) ──
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::estimate(lvm(Y1[0:2] ~ X1 + 1 * X2), data = d) at test1d-sCorrect-summary2.R:103:1
2. └─lava::lvm(Y1[0:2] ~ X1 + 1 * X2)
3. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
4. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
5. └─lava::procformula(object, value, ...)
6. ├─lava::`intercept<-`(...)
7. └─lava:::`intercept<-.lvm`(...)
8. └─lava::reindex(object)
9. └─lava:::mat.lvm(x, res)
10. └─base::cbind(idxM, pidxM)
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 228 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc