Last updated on 2024-10-15 11:49:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.8 | 9.11 | 108.47 | 117.58 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.8 | 6.02 | 79.01 | 85.03 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.5.8 | 198.06 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.8 | 205.59 | ERROR | |||
| r-devel-windows-x86_64 | 0.5.8 | 11.00 | 161.00 | 172.00 | OK | |
| r-patched-linux-x86_64 | 0.5.8 | 9.70 | 100.64 | 110.34 | OK | |
| r-release-linux-x86_64 | 0.5.8 | 9.77 | 100.82 | 110.59 | OK | |
| r-release-macos-arm64 | 0.5.8 | 145.00 | OK | |||
| r-release-macos-x86_64 | 0.5.8 | 208.00 | OK | |||
| r-release-windows-x86_64 | 0.5.8 | 12.00 | 163.00 | 175.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.8 | 224.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.5.8 | 293.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.5.8 | 14.00 | 174.00 | 188.00 | OK |
Version: 0.5.8
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘taxize’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.5.8
Check: data for non-ASCII characters
Result: NOTE
Note: found 7 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.5.8
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[ FAIL 3 | WARN 1 | SKIP 17 | PASS 171 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (16): 'test-GBIFLoginManager.R:6:3', 'test-GBIFLoginManager.R:19:3',
'test-GBIFtableCleanup.R:6:3', 'test-gbifRetriever.R:6:3',
'test-gbifRetriever.R:29:3', 'test-getBIENpoints.R:6:3',
'test-getBIENpoints.R:28:3', 'test-getGBIFpoints.R:6:3',
'test-getGBIFpoints.R:24:3', 'test-occCitation.R:26:3',
'test-occCitePrint.R:5:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-taxonRectification.R:8:3'): functions on which it depends function as necessary ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'taxize'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-taxonRectification.R:8:3
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-taxonRectification.R:43:3'): taxonRectification performs as expected ──
testResult$`Best Match`[1] == "Buteo buteo harterti" is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:44:3'): taxonRectification performs as expected ──
testResult$`Searched Taxonomic Databases w/ Matches` == "National Center for Biotechnology Information" is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 3 | WARN 1 | SKIP 17 | PASS 171 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.8
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[ FAIL 3 | WARN 1 | SKIP 17 | PASS 171 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (16): 'test-GBIFLoginManager.R:6:3', 'test-GBIFLoginManager.R:19:3',
'test-GBIFtableCleanup.R:6:3', 'test-gbifRetriever.R:6:3',
'test-gbifRetriever.R:29:3', 'test-getBIENpoints.R:6:3',
'test-getBIENpoints.R:28:3', 'test-getGBIFpoints.R:6:3',
'test-getGBIFpoints.R:24:3', 'test-occCitation.R:26:3',
'test-occCitePrint.R:5:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-taxonRectification.R:8:3'): functions on which it depends function as necessary ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'taxize'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-taxonRectification.R:8:3
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-taxonRectification.R:43:3'): taxonRectification performs as expected ──
testResult$`Best Match`[1] == "Buteo buteo harterti" is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:44:3'): taxonRectification performs as expected ──
testResult$`Searched Taxonomic Databases w/ Matches` == "National Center for Biotechnology Information" is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 3 | WARN 1 | SKIP 17 | PASS 171 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc